SNP-Seek database of SNPs derived from 3000 rice genomes 9.202 Nickolai Alexandrov,43: D1023-D1027DOI:10.1093/nar/gku1039;追溯原文 ...... 本站官方QQ群:62473826 We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (),Ramil Mauleon,Ruaraidhnbsp;Sackville Hamilton,Zhikang Li,Locedie Mansueto,2015,Victornbsp;Jun Ulat。
Gengyun Zhang。
which consists of Oracle database having a total number of rows with SNP genotypes close to 60 billion (20 M SNPs × 3 K rice lines) and web interface for convenient querying. The database allows quick retrieving of SNP alleles for all varieties in a given genome region,。
Wensheng Wang,Roven Rommel Fuentes。
finding different alleles from predefined varieties and querying basic passport and morphological phenotypic information about sequenced rice lines. SNPs can be visualized together with the gene structures in JBrowse genome browser. Evolutionary relationships between rice varieties can be explored using phylogenetic trees or multidimensional scaling plots. ,Shuaishuai Tai,Kevin Palis,Kenneth L. McNally Nucleic Acids Research,Dmytro Chebotarov。
